8-K

Quantum-Si Inc (QSI)

8-K 2025-11-05 For: 2025-11-05
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Added on April 05, 2026

UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 8-K

CURRENT REPORT

Pursuant to Section 13 OR 15(d) of the

Securities Exchange Act of 1934

Date of Report (Date of earliest event reported): November 5, 2025

QUANTUM-SI INCORPORATED

(Exact name of registrant as specified in its charter)

Delaware 001-39486 85-1388175
(State or other jurisdiction of incorporation) (Commission File Number) (IRS Employer Identification No.) 29 Business Park Drive
--- ---
Branford, Connecticut 06405
(Address of principal executive offices) (Zip Code)

Registrant’s telephone number, including area code: (866) 688-7374

N/A

(Former name or former address, if changed since last report)

Check the appropriate box below if the Form 8-K filing is intended to simultaneously satisfy the filing obligation of the registrant under any of the following provisions:

o Written communications pursuant to Rule 425 under the Securities Act (17 CFR 230.425)
o Soliciting material pursuant to Rule 14a-12 under the Exchange Act (17 CFR 240.14a-12)
o Pre-commencement communications pursuant to Rule 14d-2(b) under the Exchange Act (17 CFR 240.14d-2(b))
o Pre-commencement communications pursuant to Rule 13e-4(c) under the Exchange Act (17 CFR 240.13e-4(c))

Securities registered pursuant to Section 12(b) of the Act:

Title of each class Trading Symbol(s) Name of each exchange on<br><br>which registered
Class A common stock, par value $0.0001 per share QSI The Nasdaq Stock Market LLC
Redeemable warrants, each whole warrant exercisable for one share of Class A common stock, each at an exercise price of $11.50 per share QSIAW The Nasdaq Stock Market LLC

Indicate by check mark whether the registrant is an emerging growth company as defined in Rule 405 of the Securities Act of 1933 (§230.405 of this chapter) or Rule 12b-2 of the Securities Exchange Act of 1934 (§240.12b-2 of this chapter).

Emerging growth company      o

If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 13(a) of the Exchange Act. o

Item 2.02.     Results of Operations and Financial Condition.

On November 5, 2025, Quantum-Si Incorporated (the “Company”) issued a press release announcing its results for the three and nine months ended September 30, 2025 and provided a business update. A copy of the press release is furnished as Exhibit 99.1 hereto.

The information in this Current Report on Form 8-K (including Exhibit 99.1) shall not be deemed to be “filed” for purposes of Section 18 of the Securities Exchange Act of 1934, as amended (the “Exchange Act”), or otherwise subject to the liabilities of that section, nor shall it be deemed incorporated by reference in any filing under the Securities Act of 1933, as amended, or the Exchange Act, except as expressly set forth by specific reference in such a filing.

Item 9.01      Financial Statements and Exhibits.

(d)Exhibits.

Exhibit<br><br>No. Description
99.1 Press Release dated November 5, 2025
99.2 Use of Non-GAAP Financial Measures
104 Cover Page Interactive Data File (embedded within the Inline XBRL document)

SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned hereunto duly authorized.

QUANTUM-SI INCORPORATED
By: /s/ Jeffry Keyes
Name: Jeffry Keyes
Title: Chief Financial Officer
Date: November 5, 2025

Document

Exhibit 99.1

qsi_logoxwordmarkxbluexrgba.jpg

Quantum-Si Reports Third Quarter 2025 Financial Results

Announces Successful Sequencing on Prototype Proteus Unit, Development Program Remains

On-Track

BRANFORD, Conn. -- (BUSINESS WIRE) -- November 5, 2025 -- Quantum-Si Incorporated (Nasdaq: QSI) (“Quantum-Si,” “QSI” or the “Company”), a proteomics technology company redefining protein analysis through single-molecule detection, today announced financial results for the third quarter ended September 30, 2025.

Press Release Highlights
•Reported revenue of $552,000 for the third quarter of 2025
•Announced successful sequencing runs on a prototype Proteus system. The development program remains on track.
•Highlighted early success with instrument placement program, providing increased access to academic customers
•Highlighted recent launch and benefits of version 4 Sequencing Kit
•Confirmed version 3 Library Prep Kit for low input samples remains on track for launch before year-end 2025
•Highlighted the Company’s upcoming Investor and Analyst Day on Wednesday, November 19, 2025

“During the third quarter we launched a range of instrument acquisition options to help overcome the headwinds associated with the NIH funding uncertainty and our results thus far have been promising”, said Jeff Hawkins, President and Chief Executive Officer of Quantum-Si. “In addition to placements of Platinum Pro through traditional capital sales in the quarter, our instrument placement program allowed us to deploy our sequencing technology to several new academic customers who were previously unable to acquire the platform in the current capital spending environment. Increasing the number of customers utilizing our technology is expected to help us fulfill the goals of driving greater awareness, enabling studies that will drive publications, and capturing consumable volume and revenue. As we move forward, we will continue to use a mix of instrument acquisition options to increase the awareness of our technology and build momentum towards our future Proteus platform launch.”

Hawkins continued, “On the development front, we continue to achieve goals that we have set for ourselves, including delivering on the version 4 Sequencing Kit launch in early September and remaining on track for our version 3 Library Prep Kit launch before year end. Finally, we achieved a major milestone by demonstrating successful sequencing on a prototype Proteus system and remain on track to deliver this transformative platform in second half of 2026. We will have updates on all these initiatives, as well as a deeper dive into our Proteus platform development program and future roadmap at our Investor and Analyst Day on November 19th.”

Third Quarter 2025 Financial Results

For the third quarter of 2025, the Company recorded revenue of $552,000. Gross profit was $194,000 and gross margin was 35%. For the nine months ended September 30, 2025, the Company recorded revenue of $2.0 million, gross profit of $1.0 million, and gross margin of 52%. The periodic gross margin rate is expected

to be variable in the near term as the Company works through the initial stages of commercialization as well as the timing and mix of product sales between instruments and consumable kits.

Total operating expenses were $40.0 million in the third quarter of 2025, compared to $28.5 million for the same period in the prior year, and $96.0 million for the nine months ended September 30, 2025, compared to $78.9 million for the same period in the prior year. Adjusted total operating expenses were $21.4 million in the third quarter of 2025 compared to $26.0 million for the same period in the prior year, and adjusted total operating expenses for the nine months ended September 30, 2025 were $68.1 million compared to $72.3 million for the same period in the prior year. The Company continues to manage its operating expenses tightly, while fully funding its Proteus development program.

Net loss was $35.7 million in the third quarter of 2025, compared to a net loss of $25.3 million in the same period of the prior year, and net loss was $83.7 million for the nine months ended September 30, 2025, compared to a net loss of $67.9 million for the same period in the prior year. Adjusted EBITDA was negative $20.1 million in the third quarter of 2025, compared to negative $24.5 million in the same period of the prior year, and negative $63.7 million for the nine months ended September 30, 2025, compared to negative $67.7 million for the same period in the prior year. A reconciliation of the non-GAAP financial measures adjusted total operating expenses and adjusted EBITDA is provided in a table included in this press release. Included in total operating expenses and net loss are two one-time charges associated with legacy litigation cases that were settled during the third quarter of 2025 for a total charge of $15.4 million.

As of September 30, 2025, the Company’s cash and cash equivalents and investments in marketable securities, were $230.5 million, which is anticipated to carry operations into the second quarter of 2028.

Webcast and Conference Call Information

Quantum-Si will host a conference call to discuss its third quarter 2025 financial results on Wednesday, November 5, 2025, at 4:30 p.m. Eastern Time. Individuals interested in listening to the conference call may do so by joining the live webcast in the Investors section of the Quantum-Si website under Events & Presentations. Alternatively, individuals can register here to receive a dial-in number and personalized PIN to participate in the call. An archived webcast of the event will be available for replay following the event.

Investor Day

The Company will host an Investor and Analyst Day on Wednesday, November 19th beginning at 10:00 a.m. Eastern Time in New York. Limited space for the professional fund manager and analyst community is available through reservation, as well as ability to attend the meeting virtually for all shareholders and interested parties. Live participants should contact Investor Relations to make a reservation; all others can register here to attend virtually.

About Quantum-Si Incorporated

Quantum-Si is transforming proteomics with a benchtop platform that brings single-molecule protein analysis to every lab, everywhere. The Company’s platform enables real-time kinetic-based detection and allows researchers to move beyond traditional, multistep workflows and directly access dynamic, functional protein insights with unparalleled resolution. By making protein analysis simpler, faster, and more informative, Quantum-Si is accelerating proteomic discoveries to improve the way we live. Learn more at quantum-si.com or follow us on LinkedIn or X.

Use of Non-GAAP Financial Measures

This press release presents the non-GAAP financial measures “adjusted total operating expenses” and “adjusted EBITDA.” The most directly comparable measures for these non-GAAP financial measures are total operating

expenses and net loss. The Company has included below adjusted total operating expenses, which presents the Company’s total operating expenses after excluding stock-based compensation, net lease termination expense, legal settlement expense, net of insurance proceeds, restructuring costs and other non-recurring operating expenses. In addition, adjusted EBITDA further excludes interest, taxes, depreciation, amortization, dividend and interest income, changes in fair value of warrant liabilities and other income or expense.

A discussion of the reasons why management believes that the presentation of non-GAAP financial measures provides useful information to investors regarding the Company’s financial condition and results of operations is included as Exhibit 99.2 to the Company’s Current Report on Form 8-K filed with the Securities and Exchange Commission (the “SEC”) on November 5, 2025.

Forward Looking Statements

This press release includes “forward-looking statements” within the meaning of the “safe harbor” provisions of the United States Private Securities Litigation Reform Act of 1995. The actual results of the Company may differ from its expectations, estimates, and projections and, consequently, you should not rely on these forward-looking statements as predictions of future events. Words such as “expect,” “estimate,” “project,” “budget,” “forecast,” “anticipate,” “intend,” “plan,” “may,” “will,” “could,” “should,” “believes,” “predicts,” “potential,” “continue,” and similar expressions (or the negative versions of such words or expressions) are intended to identify such forward-looking statements. These forward-looking statements include, without limitation, the Company’s expectations with respect to future performance and development and commercialization of products and services, its anticipated cash runway, anticipated data and product launches, investor confidence in Quantum-Si and our strategic roadmap, and any financial guidance for 2025. These forward-looking statements involve significant risks and uncertainties that could cause the actual results to differ materially from those discussed in the forward-looking statements. Most of these factors are outside the Company’s control and are difficult to predict. Factors that may cause such differences include, but are not limited to: the inability to maintain the listing of the Company’s Class A common stock on The Nasdaq Stock Market; the ability of the Company to grow and manage growth profitably and retain its key employees; the Company’s ongoing leadership transitions; changes in applicable laws or regulations; the ability of the Company to raise financing in the future; the success, cost and timing of the Company’s product development and commercialization activities, including the use and benefit of artificial intelligence in these and other activities; the commercialization and adoption of the Company’s existing products and the success of any product the Company may offer in the future; the potential attributes and benefits of the Company’s commercialized Platinum® protein sequencing instruments and kits and the Company’s other products once commercialized; the Company’s ability to obtain and maintain regulatory approval for its products, and any related restrictions and limitations of any approved product; the Company’s ability to identify, in-license or acquire additional technology; the Company’s ability to maintain its existing lease, license, manufacture and supply agreements; the Company’s ability to compete with other companies currently marketing or engaged in the development or commercialization of products and services that serve customers engaged in proteomic analysis, many of which have greater financial and marketing resources than the Company; the size and growth potential of the markets for the Company’s products and services, and its ability to serve those markets once commercialized, either alone or in partnership with others; the Company’s estimates regarding future expenses, future revenue, capital requirements and needs for additional financing; the Company’s financial performance; and other risks and uncertainties described under “Risk Factors” in the Company’s most recent Annual Report on Form 10-K and Quarterly Reports on Form 10-Q and in the Company’s other filings with the SEC. The Company cautions that the foregoing list of factors is not exclusive. The Company cautions readers not to place undue reliance upon any forward-looking statements, which speak only as of the date made. The Company does not undertake or accept any obligation or undertaking to release publicly any updates or revisions to any forward-looking statements to reflect any change in its expectations or any change in events, conditions, or circumstances on which any such statement is based.

QUANTUM-SI INCORPORATED

CONDENSED CONSOLIDATED BALANCE SHEETS

(in thousands, except share and par value amounts)

(unaudited)

September 30,<br>2025 December 31,<br>2024
Assets
Current assets:
Cash and cash equivalents $ 30,910 $ 49,241
Marketable securities, current 194,934 160,362
Accounts receivable, net of allowance of $140 and $124, respectively 755 1,333
Legal settlement insurance receivable 4,638
Inventory 3,513 4,067
Prepaid expenses and other current assets 3,240 3,006
Total current assets 237,990 218,009
Marketable securities, non-current 4,691
Property and equipment, net 13,374 15,993
Operating lease right-of-use assets 3,839 13,061
Other assets 233 808
Total assets $ 260,127 $ 247,871
Liabilities and stockholders’ equity
Current liabilities:
Accounts payable $ 1,346 $ 1,931
Accrued payroll and payroll-related costs 4,776 5,331
Accrued contracted services 3,027 2,379
Accrued legal settlement liability 8,000
Accrued expenses and other current liabilities 2,096 4,848
Warrant liabilities, current 1,073
Current portion of operating lease liabilities 1,829 3,698
Total current liabilities 22,147 18,187
Warrant liabilities, non-current 4,995
Operating lease liabilities 2,781 9,250
Other long-term liabilities 40 19
Total liabilities 24,968 32,451
Stockholders’ equity:
Class A Common stock, $0.0001 par value; 600,000,000 shares authorized as of September 30, 2025 and December 31, 2024; 195,520,747 and 146,953,271 shares issued and outstanding as of September 30, 2025 and December 31, 2024, respectively 20 16
Class B Common stock, $0.0001 par value; 27,000,000 shares authorized as of September 30, 2025 and December 31, 2024; 19,937,500 shares issued and outstanding as of September 30, 2025 and December 31, 2024 2 2
Additional paid-in capital 915,452 811,998
Accumulated other comprehensive income 54 45
Accumulated deficit (680,369) (596,641)
Total stockholders’ equity 235,159 215,420
Total liabilities and stockholders’ equity $ 260,127 $ 247,871

QUANTUM-SI INCORPORATED

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS AND COMPREHENSIVE LOSS

(in thousands, except per share amounts)

(unaudited)

Three months ended September 30, Nine months ended September 30,
2025 2024 2025 2024
Revenue
Product $ 505 $ 764 $ 1,871 $ 1,776
Service 47 23 114 90
Total revenue 552 787 1,985 1,866
Cost of revenue
Product 353 416 920 835
Service 5 4 34 41
Total cost of revenue 358 420 954 876
Gross profit 194 367 1,031 990
Operating expenses:
Research and development 13,883 16,171 42,813 42,653
Selling, general and administrative 10,707 12,284 34,484 36,236
Lease termination expense, net 13,577 13,577
Legal settlement expense, net of insurance proceeds 1,800 5,162
Total operating expenses 39,967 28,455 96,036 78,889
Loss from operations (39,773) (28,088) (95,005) (77,899)
Dividend and interest income 2,580 2,688 7,439 9,149
Change in fair value of warrant liabilities 1,516 121 3,923 917
Other (expense) income, net (7) 9 (35) (10)
Loss before provision for income taxes (35,684) (25,270) (83,678) (67,843)
Provision for income taxes (19) (43) (50) (43)
Net loss $ (35,703) $ (25,313) $ (83,728) $ (67,886)
Net loss per common share attributable to common stockholders, basic and diluted $ (0.17) $ (0.18) $ (0.44) $ (0.48)
Weighted-average shares used to compute net loss per share attributable to common stockholders, basic and diluted 209,041 142,399 191,754 142,039
Other comprehensive income (loss)
Net unrealized gain (loss) on marketable securities, net of tax $ 102 $ 163 $ (5) $ 163
Foreign currency translation adjustment (8) (3) 14 (10)
Total other comprehensive income, net of tax 94 160 9 153
Comprehensive loss $ (35,609) $ (25,153) $ (83,719) $ (67,733)

QUANTUM-SI INCORPORATED

RECONCILIATION OF U.S. GAAP TO NON-GAAP FINANCIAL MEASURES

(in thousands)

(unaudited)

Three months ended September 30, Nine months ended September 30,
2025 2024 2025 2024
Net loss $ (35,703) $ (25,313) $ (83,728) $ (67,886)
Adjustments to reconcile to EBITDA:
Dividend and interest income (2,580) (2,688) (7,439) (9,149)
Depreciation and amortization 1,173 1,158 3,281 3,606
Income tax provision 19 43 50 43
EBITDA (37,091) (26,800) (87,836) (73,386)
Adjustments to reconcile to Adjusted EBITDA:
Change in fair value of warrant liabilities (1,516) (121) (3,923) (917)
Other expense (income), net 7 (9) 35 10
Stock-based compensation 2,827 2,394 7,978 6,403
Lease termination expense, net 13,577 13,577
Legal settlement expense, net of insurance proceeds 1,800 5,162
Restructuring costs (39) 23 281 197
Other non-recurring operating expenses 367 978
Adjusted EBITDA $ (20,068) $ (24,513) $ (63,748) $ (67,693)
Three months ended September 30, Nine months ended September 30,
--- --- --- --- --- --- --- --- ---
2025 2024 2025 2024
Total operating expenses $ 39,967 $ 28,455 $ 96,036 $ 78,889
Adjustments to reconcile to Adjusted total operating expenses:
Stock-based compensation (2,827) (2,394) (7,978) (6,403)
Lease termination expense, net (13,577) (13,577)
Legal settlement expense, net of insurance proceeds (1,800) (5,162)
Restructuring costs 39 (23) (281) (197)
Other non-recurring operating expenses (367) (978)
Adjusted total operating expenses $ 21,435 $ 26,038 $ 68,060 $ 72,289

Contacts

Investor and Media:

Jeff Keyes

Chief Financial Officer

ir@quantum-si.com

Source: Quantum-Si Incorporated

6

Document

Exhibit 99.2

Use of Non-GAAP Financial Measures

In addition to financial results calculated in accordance with U.S. generally accepted accounting principles (“GAAP”), information containing non-GAAP financial measures for Quantum-Si Incorporated (the “Company”) was disclosed in the Company’s press release (the “Press Release”) dated November 5, 2025 announcing results for the three and nine months ended September 30, 2025, that accompany a conference call to be held by the Company on November 5, 2025. The non-GAAP financial measures disclosed by the Company should not be considered a substitute for, or superior to, financial measures calculated in accordance with GAAP, and the financial results calculated in accordance with GAAP and reconciliations to those financial statements should be carefully evaluated. The non-GAAP financial measures used by the Company may be calculated differently from, and therefore may not be comparable to, similarly titled measures used by other companies. The Company has provided reconciliations of the non-GAAP financial measures to the most directly comparable GAAP financial measures. Management encourages readers to rely upon the reported GAAP results but includes the non-GAAP financial measures as supplemental metrics to assist readers. Definitions of the non-GAAP financial measures are included in the Press Release.

In the Press Release, the Company presented the non-GAAP financial measures “adjusted total operating expenses” and “adjusted EBITDA.” Company management uses these non-GAAP financial measures to evaluate the Company’s performance. As the Company’s core business is developing and commercializing products associated with proteomics sequencing, Company management finds it useful to use adjusted total operating expenses, which excludes stock-based compensation, net lease termination expense, legal settlement expense, net of insurance proceeds, restructuring costs and other non-recurring operating expenses. While the Company may have these types of items and charges in the future, Company management believes they are not reflective of the day-to-day core operations of the Company and relate more to strategic, multi-year corporate actions, without predictable trends, and that may obscure the trends and financial performance of the Company’s core business. In the case of “adjusted EBITDA,” Company management believes the exclusion of interest, taxes, depreciation, amortization, dividend and interest income, changes in fair value of warrant liabilities, other income or expense, stock-based compensation, net lease termination expense, legal settlement expense, net of insurance proceeds, restructuring costs and other non-recurring operating expenses is a very common measure utilized in the investment community and it helps Company management benchmark its operations and results with the industry.

The limitation associated with using these non-GAAP financial measures is that these measures exclude items that impact the Company’s current period operating results. This limitation is best addressed by using these non-GAAP financial measures in combination with “total operating expenses” and “net loss,” (the most comparable GAAP measures) because these non-GAAP financial measures do not reflect items that impact current period operating results and may be higher or lower than the most comparable GAAP measure.